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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98247487_98248276_R

Intron Information:

Intron Rank:
143646
Intron Class:
major
Intron Phase:
Intron Coordinates:
98247487 - 98248276
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTCAA
5'SS Class:
major
3'SS Sequence:
TTCTCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTCCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.7
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.7
0.62
0.8
73.7
29.9
Minor 5ss
33.7
-1.9
2.9
38.1
41
Minor BPS
77
0.84
1.5
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019464
98246592 - 98249204
2613