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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9825203_9825346_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9825203 - 9825346
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SLTFPRFLEAADMEDDDFSA
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.1
0.68
1
77.3
37
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000022965
9440165 - 9841561
401397
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000045079
9440165 - 9878311
438147