Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9826616_9829331_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

9826616 - 9829331

Intron Length:

2716

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

ACAAGCAAAACAG|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

TGTTCCTTAACA

Flanking Amino Acid:

PKPLMQAEKPDEGPNPCEMV

Intron Amino Acid Position:

1022

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.1

0.26

1.2

62.3

44.7

Major BPS

79.4

0.73

80.1

Major PPT

48.2

-0.1

1.1

37.4

37.9

Minor 5ss

88.3

1.29

1.3

81.8

38.5

Minor BPS

91.5

1.3

0.8

92.6

26.7

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147