Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9826616_9838325_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

9826616 - 9838325

Intron Length:

11710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

TTCTTGTCAACAG|G

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

TTAATGTTAAAT

Flanking Amino Acid:

PKPLMQAEKPGRFSRLRWCL

Intron Amino Acid Position:

1022

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.1

0.26

1.2

62.3

44.7

Major BPS

0.6

1.2

75.9

36.3

Major PPT

77.3

0.61

0.9

73.3

Minor 5ss

88.3

1.29

1.3

81.8

38.5

Minor BPS

51.1

0.11

2.2

74.62

41.7

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003267

9440165 - 9838495

398331