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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98290314_98291716_F

Intron Information:

Intron Rank:
143730
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
98290314 - 98291716
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CACTCATATAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
80
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
57.2
0.16
1.1
56.2
37
Minor 5ss
33.4
-1.9
2.4
38.7
39
Minor BPS
58.4
0.34
1.7
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037457
98289958 - 98385840
95883