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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98291811_98293833_F

Intron Information:

Intron Rank:
143731
Intron Class:
major
Intron Phase:
Intron Coordinates:
98291811 - 98293833
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CACTGATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
73.9
0.54
0.9
69.3
40.5
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
73.7
0.82
1.6
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037457
98289958 - 98385840
95883