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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9829415_9830433_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9829415 - 9830433

Intron Length:

1019

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTTATTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

TTTTCCTCTACT

Flanking Amino Acid:

PDVCFDEAKQDQPICTTSRA

Intron Amino Acid Position:

1050

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.9

36.1

Major BPS

0.47

1.2

61.1

45.5

Major PPT

70.2

0.46

66.5

38.6

Minor 5ss

40.9

-1

3.2

55.7

48.5

Minor BPS

72.2

0.78

1.8

93.02

35.2

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019885

9440165 - 9838362

398198