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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9829415_9838325_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9829415 - 9838325

Intron Length:

8911

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

TTAATGTTAAAT

Flanking Amino Acid:

PDVCFDEAKQEDSADCGGVS

Intron Amino Acid Position:

997

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.9

36.1

Major BPS

0.6

1.2

75.9

36.3

Major PPT

77.3

0.61

0.9

73.3

Minor 5ss

40.9

-1

3.2

55.7

48.5

Minor BPS

51.1

0.11

2.2

74.62

41.7

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022965

9440165 - 9841561

401397

ENSAPLT00000021475

9440165 - 9838442

398278