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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9829415_9878012_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9829415 - 9878012
Intron Length:
48598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GAACTGTTAACA
Flanking Amino Acid:
PDVCFDEAKQ*
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
49.2
-0
2
59.62
39.5

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000043964
9440165 - 9878311
438147