About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98294762_98382331_F

Intron Information:

Intron Rank:
143733
Intron Class:
major
Intron Phase:
Intron Coordinates:
98294762 - 98382331
Intron Length:
87570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
33.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
40.5
-1.1
2.7
50.4
46
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037457
98289958 - 98385840
95883