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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98426229_98433258_F

Intron Information:

Intron Rank:
144137
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
98426229 - 98433258
Intron Length:
7030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTGAATATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATTACTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
59.6
0.22
1
57.2
42
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
57.6
0.23
1.7
66.65
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036582
98426071 - 98448865
22795