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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98433336_98446804_F

Intron Information:

Intron Rank:
144138
Intron Class:
major
Intron Phase:
Intron Coordinates:
98433336 - 98446804
Intron Length:
13469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
66.2
0.5
1.7
78.67
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036582
98426071 - 98448865
22795