About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98434578_98439626_R

Intron Information:

Intron Rank:
141268
Intron Class:
major
Intron Phase:
Intron Coordinates:
98434578 - 98439626
Intron Length:
5049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CTGTCCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.3
0.44
1
69.5
36.8
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
59.5
0.28
1.8
70.75
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023345
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029634
98434527 - 98441911
7385