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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98434578_98441555_R

Intron Information:

Intron Rank:
141270
Intron Class:
major
Intron Phase:
Intron Coordinates:
98434578 - 98441555
Intron Length:
6978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.3
0.44
1
69.5
36.8
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
59.5
0.28
1.8
70.75
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023345
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037824
98434527 - 98441911
7385