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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98446890_98447464_F

Intron Information:

Intron Rank:
144134
Intron Class:
major
Intron Phase:
Intron Coordinates:
98446890 - 98447464
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCCATTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
0.9
61.4
39.8
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
49.2
-0
1.5
51.88
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034261
98446704 - 98462523
15820