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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98447567_98458532_F

Intron Information:

Intron Rank:
144135
Intron Class:
major
Intron Phase:
Intron Coordinates:
98447567 - 98458532
Intron Length:
10966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGTTGAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
77.4
0.62
1
73.6
41.8
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
50.2
0.09
2.3
79.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034261
98446704 - 98462523
15820