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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98451941_98458532_F

Intron Information:

Intron Rank:
144133
Intron Class:
major
Intron Phase:
Intron Coordinates:
98451941 - 98458532
Intron Length:
6592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGTTGAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
77.4
0.62
1
73.6
41.8
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
50.2
0.09
2.3
79.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024833
98446876 - 98458616
11741