About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98475451_98477312_F

Intron Information:

Intron Rank:
147161
Intron Class:
major
Intron Phase:
Intron Coordinates:
98475451 - 98477312
Intron Length:
1862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.6
0.62
0.9
74.7
39.8
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029274
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046890
98475387 - 98484249
8863