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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_984999_986158_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
984999 - 986158
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
DLIPKFLMANGQLVKMLLYT
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
GDI2
Ensembl Gene ID:
ENSAPLG00000007527
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007851
980221 - 986907
6687