About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98553651_98568881_R

Intron Information:

Intron Rank:
148987
Intron Class:
major
Intron Phase:
Intron Coordinates:
98553651 - 98568881
Intron Length:
15231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGATAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
63.2
38.4
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
36.7
-1.5
3.2
41.6
45.2
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038327
98553467 - 98578076
24610