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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98755661_98756288_R

Intron Information:

Intron Rank:
133813
Intron Class:
major
Intron Phase:
Intron Coordinates:
98755661 - 98756288
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATAGG
5'SS Class:
major
3'SS Sequence:
TGAAATACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTGTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
68.8
42.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
61.1
0.25
1
56.5
43.8
Minor 5ss
36.2
-1.6
2.8
42.2
38.8
Minor BPS
49.2
0.02
1.9
69.92
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048332
98753884 - 98756525
2642