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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_98895271_98897689_F

Intron Information:

Intron Rank:
138895
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
98895271 - 98897689
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATGGGGTCCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTTGTTGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
59.1
0.2
1
49.9
43.4
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
48.9
-0
2.3
73.89
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022387
98895184 - 98898225
3042