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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99158817_99266805_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99158817 - 99266805
Intron Length:
107989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGC
5'SS Class:
major
3'SS Sequence:
TTTTATGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATGTTATA
Flanking Amino Acid:
DNGDNSLGYTGSRLRQEDFP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
58.1
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.9
76.7
37.2
Minor 5ss
35
-1.7
3.6
49.7
46.9
Minor BPS
46
-0.3
2.4
67.51
39.1

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542