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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9916690_9917779_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9916690 - 9917779
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTA|GCCAATCTT
5'SS Class:
weak_major
3'SS Sequence:
AAAACACTGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATCAAGG
Flanking Amino Acid:
FPLAVQPNFPIKTKLLNTTE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.3
63.3
40.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
46.3
-0.2
1.2
39.3
38.3
Minor 5ss
26.5
-2.7
4
43.2
39
Minor BPS
46
-0.4
2.1
53.64
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019378
9916470 - 9923482
7013