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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9917859_9922742_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9917859 - 9922742
Intron Length:
4884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCA
Flanking Amino Acid:
SRNKGLSFTCKAFAYDRVTK
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
63.8
0.43
1.8
79.26
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019378
9916470 - 9923482
7013