About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9927510_9928175_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9927510 - 9928175
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAAGACC
5'SS Class:
weak_major
3'SS Sequence:
TATCGGGGTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCCTTCGAGC
Flanking Amino Acid:
LKFKAVVASGNLRENYCRNP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1
55.3
35.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
49.8
-0
1.2
47.6
43.9
Minor 5ss
29.3
-2.4
3.1
36.5
35.4
Minor BPS
47
-0.2
1.8
59.05
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003585
9927476 - 9947328
19853