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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9930133_9934837_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9930133 - 9934837
Intron Length:
4705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
TTGTGGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAC
U12 Branch Point Sequence:
GCTTGCTTGACA
Flanking Amino Acid:
RPHKHKFRPERYPDKGFDDN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
63.1
0.41
1.8
71.05
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003585
9927476 - 9947328
19853