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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99420253_99450985_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99420253 - 99450985
Intron Length:
30733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTGTTATCC
Flanking Amino Acid:
PLDDKDERITIRGGKLMITY
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.1
0.59
0.9
69.4
41.7
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
49.9
-0
2.3
71.17
40.3

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026985
99222762 - 99475241
252480
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000029574
99157878 - 99540419
382542