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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99458633_99459899_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99458633 - 99459899
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TGTATATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTATAT
Flanking Amino Acid:
RKDDGELPKARYEIRDDHTL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
68.6
0.42
1.1
67.8
41.8
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
57
0.3
2
79.78
41.4

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026985
99222762 - 99475241
252480
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000029574
99157878 - 99540419
382542