Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99485030_99485195_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99485030 - 99485195

Intron Length:

166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAG

U12 Branch Point Sequence:

CTGTCTATACTC

Flanking Amino Acid:

ATWSAYIEVQEFGVPVQPPR

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

79.8

35.1

Major BPS

63.2

0.33

1.5

71.6

36.4

Major PPT

75.4

0.57

0.9

76.7

Minor 5ss

41.1

-1

2.9

57.5

46.8

Minor BPS

47.6

-0.2

1.9

58.22

41.7

Associated Gene:

Gene:

ROBO1

Ensembl Gene ID:

ENSAPLG00000006648

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017418

99157878 - 99540419

382542

ENSAPLT00000036470

99005304 - 99540419

535116

ENSAPLT00000006969

99413497 - 99540917

127421

ENSAPLT00000031775

99157878 - 99540419

382542

ENSAPLT00000029574

99157878 - 99540419

382542

ENSAPLT00000026805

99157878 - 99540917

383040