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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99485632_99488758_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99485632 - 99488758
Intron Length:
3127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TAAATTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
GAATCTTAAATT
Flanking Amino Acid:
SQISDPVKTQDVPPTSQGVD
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
73.5
0.53
1
66.2
43.5
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
58.6
0.35
1.6
70.59
40.6

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000006969
99413497 - 99540917
127421