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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99491547_99492816_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
99491547 - 99492816
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCAAATGAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCTCTCCAAAT
Flanking Amino Acid:
EVKFAKTLEEAPSAPPQSVS
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
82.9
36.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
56.5
0.15
1.1
50.5
41.5
Minor 5ss
24.8
-2.9
3.6
33.4
41.8
Minor BPS
49.7
0.06
2
74.23
42.4

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040