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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99503860_99507313_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99503860 - 99507313
Intron Length:
3454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCATAT
5'SS Class:
major
3'SS Sequence:
TTTGATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATT
Flanking Amino Acid:
LTSTYAGIRKVPSFTFTPTV
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
64.9
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.3
0.84
0.8
84.8
35.4
Minor 5ss
38.6
-1.3
3.3
55.8
48.4
Minor BPS
66.4
0.6
1.3
81.5
34.7

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000017418
99157878 - 99540419
382542