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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99510084_99513798_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99510084 - 99513798
Intron Length:
3715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
RGGDAVSSGGRPGLLNISEP
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000036470
99005304 - 99540419
535116