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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99513954_99517895_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99513954 - 99517895
Intron Length:
3942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTGGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
DSNLTTYSRPADCIANYNNQ
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
78.9
30.7
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
60.4
0.23
1.1
60.8
40.2
Minor 5ss
36
-1.6
3
47.9
47.7
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000036470
99005304 - 99540419
535116