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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99518232_99520696_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99518232 - 99520696
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAGC
5'SS Class:
major
3'SS Sequence:
ATTAAACTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGGCATTAACT
Flanking Amino Acid:
NIMEQNKLNKDYRVNDNIAP
Intron Amino Acid Position:
967

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66.3
39.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.9
0.49
1
62.9
42.4
Minor 5ss
26.5
-2.7
3
33.9
41.8
Minor BPS
63.5
0.5
1.8
78.01
43.9

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000036470
99005304 - 99540419
535116