Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99524154_99527737_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99524154 - 99527737

Intron Length:

3584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTTATGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTTCTTACTC

Flanking Amino Acid:

LGHIQHQPDRRRQPVSPPPP

Intron Amino Acid Position:

1135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

75.7

35.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.5

0.8

0.9

81.6

34.7

Minor 5ss

36.5

-1.5

2.9

47.2

Minor BPS

65.4

0.46

1.6

73.1

38.8

Associated Gene:

Gene:

ROBO1

Ensembl Gene ID:

ENSAPLG00000006648

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006969

99413497 - 99540917

127421

ENSAPLT00000031775

99157878 - 99540419

382542

ENSAPLT00000029574

99157878 - 99540419

382542

ENSAPLT00000026805

99157878 - 99540917

383040

ENSAPLT00000017418

99157878 - 99540419

382542

ENSAPLT00000036470

99005304 - 99540419

535116