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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99528148_99530232_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99528148 - 99530232
Intron Length:
2085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TAACAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTTCTGTAACA
Flanking Amino Acid:
ARRQMQDAAGGRRHFHASHC
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.4
0.48
1
66.7
43.3
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
66.4
0.51
2
79.83
36.4

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029574
99157878 - 99540419
382542
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000031775
99157878 - 99540419
382542