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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99538840_99540111_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99538840 - 99540111
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATTTTG
5'SS Class:
major
3'SS Sequence:
TTTTATTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTA
Flanking Amino Acid:
GTPAKTHLLQEDILPYSRPT
Intron Amino Acid Position:
1426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
72.8
39
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.5
0.8
0.9
80.9
35.5
Minor 5ss
40.2
-1.1
2.7
50.5
45.8
Minor BPS
54.1
0.12
1.5
64.41
36.3

Associated Gene:

Gene:
ROBO1
Ensembl Gene ID:
ENSAPLG00000006648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026805
99157878 - 99540917
383040
ENSAPLT00000017418
99157878 - 99540419
382542
ENSAPLT00000036470
99005304 - 99540419
535116
ENSAPLT00000006969
99413497 - 99540917
127421
ENSAPLT00000031775
99157878 - 99540419
382542
ENSAPLT00000029574
99157878 - 99540419
382542