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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99637687_99640614_F

Intron Information:

Intron Rank:
138385
Intron Class:
major
Intron Phase:
Intron Coordinates:
99637687 - 99640614
Intron Length:
2928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATGGCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATGTGCTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
79.5
29.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.8
0.45
1
62.7
43
Minor 5ss
43.7
-0.7
2.9
59.8
40
Minor BPS
40.1
-0.7
2.4
55.39
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034687
99629246 - 99648311
19066
ENSAPLT00000026327
99629246 - 99644942
15697