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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99641029_99644898_F

Intron Information:

Intron Rank:
138386
Intron Class:
major
Intron Phase:
Intron Coordinates:
99641029 - 99644898
Intron Length:
3870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTGTCTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.7
0.53
0.9
66.6
39.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
63.8
0.42
1.7
73.46
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026327
99629246 - 99644942
15697