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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99774361_99819834_R

Intron Information:

Intron Rank:
149508
Intron Class:
major
Intron Phase:
Intron Coordinates:
99774361 - 99819834
Intron Length:
45474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TTGCCTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTGTCCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
79.9
0.67
0.8
72.6
37.5
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
68.3
0.57
1.7
74.81
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027948
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046100
99773388 - 99819894
46507