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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99806791_99810216_R

Intron Information:

Intron Rank:
149386
Intron Class:
major
Intron Phase:
Intron Coordinates:
99806791 - 99810216
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.2
0.59
0.9
72.4
36.7
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
74.1
0.75
1.5
81.61
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018628
99806721 - 99811122
4402