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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9984344_9984962_F

Intron Information:

Intron Rank:
133802
Intron Class:
major
Intron Phase:
Intron Coordinates:
9984344 - 9984962
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CCTTCAATAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGTCCTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
68.7
0.42
1
62.9
36.1
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
61.1
0.35
1.5
69.99
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032815
9984203 - 9986518
2316