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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9985079_9985548_F

Intron Information:

Intron Rank:
133803
Intron Class:
major
Intron Phase:
Intron Coordinates:
9985079 - 9985548
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTATTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
76.4
38.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.7
0.78
0.8
76.7
37.5
Minor 5ss
45.5
-0.5
2.9
63.7
41.9
Minor BPS
60
0.39
1.6
77.49
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032815
9984203 - 9986518
2316