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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9985605_9986084_F

Intron Information:

Intron Rank:
133804
Intron Class:
major
Intron Phase:
Intron Coordinates:
9985605 - 9986084
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
61.8
0.35
1.4
68.78
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032815
9984203 - 9986518
2316