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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99880639_99884972_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99880639 - 99884972
Intron Length:
4334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCC
5'SS Class:
major
3'SS Sequence:
TTTGAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTTTGAATT
Flanking Amino Acid:
NSSERSGSLSGGKGGKKKKN
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
67.9
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.5
0.69
0.9
73.3
40.8
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
66.8
0.61
1.3
79.72
37

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000021774
99843306 - 100074452
231147