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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99885099_99885465_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99885099 - 99885465
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTACA
5'SS Class:
major
3'SS Sequence:
CTTTAACCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGCCCTTTAACC
Flanking Amino Acid:
SLPDQGKGNNALLYIPDYRV
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.3
34
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
70.2
0.46
0.8
67.3
33.8
Minor 5ss
36.2
-1.6
2.6
40.8
40
Minor BPS
71.2
0.65
1.2
72.5
38.5

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000021774
99843306 - 100074452
231147
ENSAPLT00000020165
99843306 - 100074452
231147