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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99892999_99902824_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
99892999 - 99902824
Intron Length:
9826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
AACCAAAATACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTTTTTCCAACC
Flanking Amino Acid:
KKRKGLSNYAVTFQRGDGGL
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
54.2
0.09
1.1
44.5
39.5
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
50.8
0
1.8
67.76
37.6

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179
ENSAPLT00000021774
99843306 - 100074452
231147