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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99903008_99908941_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99903008 - 99908941
Intron Length:
5934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
GTCCTGTCAACT
Flanking Amino Acid:
VKSEPQPIIIGGRNEVVITE
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
86.8
0.83
0.8
83.9
31.1
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
46.4
-0.2
2.2
65.97
44.5

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179
ENSAPLT00000021774
99843306 - 100074452
231147